Browsing M.S. Theses by Subject "Protein binding."

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Collective dynamics of protein complex structures : scoring and prediction

Özsezen, Serdar. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2015., 2015.)

Docking algorithms are widely used in determination of protein complex structures. In order to determine which structure is the most similar to native one, ranking algorithms are used in docking studies. Each year both ...
Determination of protein-protein binding sites using machine learning tools

Sümbül, Fidan. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2008., 2008.)

Protein-protein interactions are involved in almost all biological processes. Thus, the understanding of the principles underlying these interactions is of great significance. This is mainly to identify the functional sites ...
Study of protein-protein interfaces using Gaussian network model

Soner, Seren. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2009., 2009.)

The interface type of the proteins are useful in determining the functioning mechanism of proteins. The interface type may either be obligatory, non-obligatory or crystal (non biological). Previous studies have tried to ...

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