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Yazar "Bahar, Ivet." için M.S. Theses listeleme

Yazar "Bahar, Ivet." için M.S. Theses listeleme

Sırala: Sıra: Sonuçlar:

  • Determination of protein structures using distance constraints 
    Samur, Başak. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 1998., 1998.)
    Constraints of different types are applied to a protein chain of 30 residues by using a low resolution model adopted from the cooperative kinematics (CK) model of polymers. The aim was to investigate the importance of the ...
  • Identification of native conformations of proteins using a low resolution model 
    Özkan, Ş. Banu. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Sciences and Engineering, 1997., 1997.)
    Exhaustive enumeration is performed by using a low resolution model. The secondary structure elements of the proteins are kept as rigid blocks. Large ensembles of decoy structures are generated by rotating the virtual ...
  • Molecular Dynamics simulation of polymeric systems 
    Badur, Bertan Yılmaz. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 1992., 1992.)
    In this thesis, the dynamic and static properties of a polymeric chain in a dilute solution was investigated with the method of molecular dynamics (MD) simulation. We investigated both the equilibrium properties of polymer ...
  • Packing regularities in folded proteins 
    Bağcı, Elife Zerrin. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2001., 2001.)
    Using lattice models of proteins is a common method to reduce conformational space. Despite the suitability of various lattice geometries, the optimal packing geometry of residues in folded structures, or the generic ...
  • Simulation of protein structure by a simplified model: |application to the rop dimer 
    Akten, E. Demet. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 1996., 1996.)
    In this thesis, the estimation of the native three-dimensional structure of a dimeric protein, Rop, from its amino-acid sequence is performed. Rop is a small RNA-binding protein that is coded by certain plasmids and is ...

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