Yayın tarihi için M.S. Theses listeleme

Sırala: Sıra: Sonuçlar:

  • Effect of simultaneous beta-lactamase inhibitor protein expression on cellular beta-lactamase activity 
    Yalaz, Kadriye Simay. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2012., 2012.)
    β-lactam antibiotics are commonly used in the treatment of bacterial infections. However, due to underuse and misuse of β-lactam antibiotics, bacteria have developed mechanisms that counteract β-lactam antibiotics. The ...
  • Causality in time series : dynamic time warping versus granger causality 
    Yallak, Leyla Zeynep. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2012., 2012.)
    Causality is a concept studied in various areas such as economics, and engineering. Identifying the cause and effect relations among variables is important as it enables the control of the effected variable by the variation ...
  • Prediction of potential inhibitors against Yersinia YopE and Salmonella SopE by virtual screening and docking 
    Özbüyükkaya, Gizem. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2012., 2012.)
    Outer proteins of gram negative bacteria Yersinia and Salmonella secrete virulence factors that invade eukaryotic cells via type III secretion system. Yersinia outer protein E, YopE, and Salmonella outer protein E, SopE, ...
  • Analysis of cracking phenomena along conformational transition pathways of proteins 
    Meriçer, Çağlar. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2012., 2012.)
    The weighted ensemble (WE) methodology was incorporated into an iterative ANM-MC (Anisotropic network model- Monte Carlo) simulation algorithm, which has been developed to generating targeted conformational transition ...
  • Identification of PTP1B dynamics using frequency response analysis 
    Eren, Dilek. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2012., 2012.)
    Protein tyrosine phosphatase 1B (PTP1B) plays a key role as negative regulator of insulin and leptin signaling. In human PTP1B, a significant conformation change is seen in the WPD loop from open (inactive) to closed ...
  • Constrained neural networks 
    Özer, Ümit. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2012., 2012.)
  • Optimal design under uncertainty via CVaR (conditional value at risk) 
    Kumbasar, Sıla. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2012., 2012.)
    The aim of this thesis work is to investigate the possibility of controlling and (re)shaping the statistical probability distribution of optimal objective function values in optimization problems related to process synthesis, ...
  • Data compression and reconstruction in process engineering applications 
    Önol, Ceyda. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2012., 2012.)
    Recent improvements in sensor technology have resulted in huge amount of measured process data along with the increasing need for compression prior to storage. Hence, efficient process data compression and reconstruction ...
  • Effect of the direction of the electric field on the interfacial instability between a newtonian fluid and a viscoelastic polymer 
    Nurocak, Aybike. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2012., 2012.)
    Micro channels are widely used in many industrial applications as they offer the ability to work in small volumes, consume low energy and less time, and reduce costs. Another important application of microfluidics is to ...
  • Investigation of conformational fluctuations in protein dynamics: torsional Gaussian Network Model 
    Özbakır, Harun Ferit. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2012., 2012.)
    Elastic network models based on Normal Mode Analysis (NMA) are very useful in determining the conformational fluctuations that would affect the functions of proteins. Gaussian Network Model (GNM) is proved to be a very ...
  • Virtual screening and docking of potential protein kinase B inhibitors 
    Kenar, Seval. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2012., 2012.)
    This study aims to carry out a molecular docking process of novel ATP competitive inhibitors for protein kinase B-beta (PKBβ / AKT-2), activation of which has been observed in 30-40% of ovarian and pancreatic cancers. 3D ...
  • A DFT study on interaction between Au, Re and Au-Re surfaces with species involved in WGS reaction 
    Uzun, Ali. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2012., 2012.)
    In this study, the steps of WGS reaction was investigated through studying the adsorption/co-adsorption of its reactants, products and possible intermediate species on Au(111), Re(001) and Au-Re(001) surfaces at atomic ...
  • An in silico study on ribosome-binding trigger factor 
    Can, Mehmet Tarık. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2013., 2013.)
    The trigger factor protein (TF), unique to bacterial organisms, binds to ribosome tunnel mouth and works as a chaperone in helping the nascent chains emerging from the ribosome tunnel to acquire their native fold. A 500 ...
  • The theoretical analysis of the interaction between methane dehydrogenation and carbon dioxide dissociation products with Ni and PtNi surfaces 
    Ayvaz, Merve. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2013., 2013.)
    Catalytic Dry Reforming of Methane (CDRM), in general sense, involves simultaneous carbon dioxide disproportionation yielding carbon monoxide and surface oxygen, methane dehydrogenation yielding hydrogen, CHx groups and ...
  • Neural networks analysis of water gas shift reactions over nobel metal catalysts using published data in literature 
    Odabaşı, Çağla. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2013., 2013.)
    The aim of this thesis is to apply the machine learning methodologies for knowledge extraction from experimental data for water gas shift reaction over noble metal catalysts from the papers published in the literature to ...
  • Investigation of dynamic allostery in motor proteins 
    Kaya, Cihan. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2013., 2013.)
    Allostery is a key concept in regulation of protein function. The communication pathways which are equivalent of the allosteric signaling or energy propagation pathways are the most significant aspect of allosteric mechanism. ...
  • Design and characterization of polymer-fullerene bulk heterojunction solar cells 
    Solak, Selen. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2013., 2013.)
    Design and characterization of polymer-fullerene bulk heterojunction solar cells were experimentally studied in this study. In the experiments, ITO or highly conductive PEDOT:PSS coated glasses were used as anode, P3HT and ...
  • Oxidative steam reforming of light hydrocarbons in a catalytic microchannel reactor 
    Şen, İrem. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2013., 2013.)
    Oxidative steam reforming (OSR) reaction of light hydrocarbons (methane and propane) is investigated under exhaust gas reforming (EGR) conditions in a catalytic heat-exchange integrated microchannel by computational and ...
  • Identification of allosteric AKT inhibitors by computational methods 
    Gürsoy Yılmaz, Oya. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2013., 2013.)
    AKT kinases are known to be major contributors to the development of many human cancers according to preclinical data and studies of tumor specimens. Design and development of small molecule inhibitors targeting AKT and ...
  • Modeling and simulation of oxidative coupling of methane in a heat-exchange integrated microchannel reactor 
    Tezcan, Funda İdil. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2013., 2013.)
    Oxidative coupling of methane (OCM) involves catalytic conversion of methane into C2 hydrocarbons (ethane and ethylene) and offers an alternative oil-free production of important feedstock used in petrochemical industry. ...

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