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Browsing M.S. Theses by Author "Graduate Program in Computational Science and Engineering."

Browsing M.S. Theses by Author "Graduate Program in Computational Science and Engineering."

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  • Exploring the intrinsic dynamics of human beta-2 adrenergic G-protein coupled receptor 
    Özcan, Özer. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2011., 2011.)
    G protein-coupled receptors (GPCRs) represent the single largest family of cell surface receptors involved in signal transduction. It is estimated that several hundred distinct members of this receptor family in humans ...
  • Facial expression recognition in the wild using improved trajectories and fisher vector encoding 
    Afsharsavojbolaghi, Sadaf. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2016., 2016.)
    Automatic video data analysis has been a growing interest in order to improve human computer interaction. One of the most challenging parts in video analysis is the ability of evaluating human emotion robustly. Vast ...
  • Fair recommendation through conditioning on systematic presentation in recommender systems 
    Bozal, Özge. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2021., 2021.)
    Recommendation engines are interactive systems aiming to predict users’ top preferences according to their choices. A limitation of the recommender systems is that over time the recommendations get narrower in scope. That ...
  • Fractal analysis of stock exchange indices in Turkey 
    Kandıran, Engin. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2015., 2015.)
    The purpose of this study is to investigate possible fractal behavior in Istanbul Stock Exchange (BIST) indices. In particular evidence of chaotic and fractal behavior will be presented. To be able to analyze monofractality ...
  • Genome-scale metabolic reconstruction of freshwater organism Daphnia pulex 
    Başıbüyük, Selma. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2019., 2019.)
    The aim of this study is the reconstruction of the genome-scale model of an ecological organism and investigation of its cellular functionality towards toxicity by using computational systems biology approaches. Daphnia ...
  • Graphical user interface customization for the elderly in ambient assisted living environments 
    Torun, Mustafa. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2012., 2012.)
    With the help of the graphical user interfaces (GUI), young people or everyday-computer-users can easily get accustomed to the various digital devices. However, acceptability of GUIs by elderly, as the rapidly growing group ...
  • Gridded distribution of daily non-uniform meteorological station data of Turkey 
    Heperkan, Ömer. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2019., 2019.)
    The climate modeling is a complex area to work on. It is not easy to represent the atmospheric events in a model, because there are a lot of drivers and variables which af fects the local and global climate. Even if, ...
  • Gridification of earthquake location finding and regional fault plane solution applications 
    Bektaş, Bilal. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2013., 2013.)
    In this thesis, two studies have been conducted. One of them is Gridi cation of Earthquake Location Finding (ELF) Application and the other one is Gridi cation of Regional Fault Plane Solution (FPS) Application. Earthquake ...
  • In silico determination of orthosteric and allosteric inhibitors of sphingosine kinase 1 (SK1) 
    Bayraktar, Özge. (Thesis (Ph.D.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2016., 2016.)
    The sphingosine kinase 1 (SK1)/sphingosine-1-phosphate (S1P) signaling pathway is a crucial target for numerous human diseases from cancer to cardiovascular diseases. Even though the discovery of SK1 inhibitors has been ...
  • Investigation of allosteric coupling in beta-2 adrenergic receptor through molecular dynamics simulations 
    Özgür, Canan. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2014., 2014.)
    The purpose of this thesis is to investigate the allosteric coupling between intra- and extracellular parts of G-protein coupled human β2 adrenergic receptor (β2AR) in the presence of intracellular loop ICL3, which is ...
  • Investigation of the metabolic changes in the adaptive evolution of S. Cerevisiae strains by using genome-scale metabolic models 
    Çetin, Handan. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2021., 2021.)
    Increasing an organisms’ tolerance level to various stress conditions is one of the most common applications of adaptive laboratory evolution (ALE) experiments which provides high amounts of genomic and experimental data ...
  • Likelihood free particle filtering with Approximate Bayesian Computation for parameter estimation in cosmic ray air shower studies 
    Yabaş, M. Kutay. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2020., 2020.)
    Highly energetic particles called cosmic rays arrive at earth and interact with the atmosphere to cause other particles to emerge and fuel a chain interaction of particle production until the energy is dissipated. These ...
  • Machine learning methods in natural language processing 
    Güvenç, Betül. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2016., 2016.)
    There is a large number of algorithms for keyword extraction and text summarization in natural language processing, as we discuss some of these in this thesis. We started with a survey on automatic text summarization in ...
  • Merger dynamics in three agent games 
    Derici, Rüştü. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2009., 2009.)
    The thesis analyses the dynamics of merger in three agent games. The purpose of the study is to nd out how merger a ects the social structure. To begin with the de nition of a game, it is a series of competitions. In these ...
  • Meshless modeling of wave induced flows inside sandy sea beds 
    Timuçin, Burak Can. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2015., 2015.)
    Ocean waves have been research focus for scientists and engineers for the last several decades, being one of the most dominant physical phenomena that affect the coastal zones. Varieties of wave theories have been developed ...
  • Modeling bounded data with sum conditioned poisson factorization 
    Ceritli, Taha Yusuf. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2017., 2017.)
    Non-negative matrices appears in many domains from item recommendation, audio signal processing to computer vision in which data instances have a bounded non-negative range. For various tasks in these areas, probabilistic ...
  • Modelling wave transformations using extended mild-slope equation and the radial basis function colloaction method 
    Manat, Onur. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2021., 2021.)
    In this study, the extended mild-slope equation is modelled over different topogra phies using the Radial Basis Function Collocation Method. In the numerical model, the equation preserved its elliptic form and two related ...
  • Numerical modeling of nearshore wave transformation using the meshless multiquadric method 
    Adak, Zeynep. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2011., 2011.)
    In the present study, nearshore wave transformation is numerically modeled using meshless multiquadric (MQ) method. The processes of water wave refraction, shoaling, breaking and re-forming; which are commonly observed in ...
  • Numerical modeling of sloshing using the radial basis function collocation method 
    Çakıroğlu, Kerem R. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2012., 2012.)
    A series of numerical models have been developed to study sloshing in 2D and 3D Rigid Tanks. The problem is approached with Potential Flow Theory and Laplace’s equation is solved with Neumann type lateral and bottom boundary ...
  • Parallel point classification into geographical regions 
    Tarmur, Sanver. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2018., 2018.)
    The amount of data generated by social media, social networks and distributed platforms such as blockchain, have reached quite high levels. There are various use cases to process this huge amount of data. One is to classify ...

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