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Browsing Kimya Mühendisliği by Subject "Ligand binding (Biochemistry)"

Browsing Kimya Mühendisliği by Subject "Ligand binding (Biochemistry)"

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  • Analysis of ligand binding effect on enzyme dynamics using elastic network models 
    Fındık, Hüseyin Doğa. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2015., 2015.)
    The objective of this thesis was to investigate the e ect of ligand binding on global vibrational modes of an enzyme, triosphosphate isomerase (TIM). For this aim, mixed coarse-grained elastic network model ENM (MCG ENM) ...
  • Ligand docking to proteins undergoing large conformational changes 
    Üçkan, Damla. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2019., 2019.)
    Conformational transitions and ligand binding to the enzyme adenylate kinase were investigated by computational docking. Autodock was used to investigate the dynamics of 92 atomistic conformers, which have been previously ...

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