Browsing Kimya Mühendisliği by Issue Date

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  • Integrated neurovascular coupling (NVC) model: an fNIRS study on migraine 
    Taşdöğen, Selin. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2007., 2007.)
    Functional imaging techniques play a major role in monitoring the changes in brain hemodynamics. Migraine is one of the weirdest illnesses that have ever been described. It does not leave any symptom in patients like the ...
  • Glucose avidase immobilization by polymer matricies in supercritical carbon dioxide environment for biosensor preparation 
    İnoğlu, Nilay. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2007., 2007.)
    In this study, immobilization of glucose oxidase (GOX) by polyurethane (PU) film and PU foam matrices using supercritical carbon dioxide (scCO2) was realized and proposed as a new technique to be used in biosensor preparations. ...
  • Kinetics of low temperature CO oxidation over activated carbon supported Pt-CeOx catalyst 
    Gülyüz, Berrin. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2007., 2007.)
    Kinetics of low-temperature CO oxidation was studied both in the presence and in the absence of carbon dioxide and hydrogen over air-oxidized activated carbon supported Pt-CeOx catalyst prepared by sequential impregnation ...
  • System biology of yeast signal transduction 
    Arğa, Kazım Yalçın. (Thesis (Ph.D.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2007., 2007.)
    Reconstruction of protein interaction networks that represent groups of proteins contributing to the same cellular function is a key step towards quantitative studies of signal transduction pathways. In the present study, ...
  • Steam reforming of ethanol over Pt-Ni/Al2O3 catalyst 
    Baltacıoğlu, Fatma Soyal. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2007., 2007.)
    This experimental work involves a parametric study of the bimetallic Pt-Ni/δ-Al2O3 catalysts with different Pt and Ni loadings (0.2wt%Pt-10wt%Ni, 0.3wt%Pt-10wt%Ni, 0.2wt%Pt-15wt%Ni, 0.3wt%Pt-15wt%Ni) for hydrogen production ...
  • Metabolite footprinting and fingerprinting in Saccharomyces cerevisiae 
    Aygök, Ali Erdem. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2007., 2007.)
    The metabolic response of S. cerevisiae cells of galactose metabolic pathway genes, hexose transporter genes, transcription regulation and respiration related genes were investigated. Homozygous deletion mutants rgt1Δ/ ...
  • Studies on the role of HAP4, MIG1 and MIG2 in transcriptional control network of Saccharomyces Cerevisiae 
    Dereli, Elif. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2007., 2007.)
    In this study, transcriptional responses of HAP4, MIG1, MIG2 and GSM genes to transient perturbations under glucose and nitrogen limited conditions were investigated in order to understand glucose sensing and signaling ...
  • Carbon dioxide adsorption on flat Pt3Sn surfaces 
    Başaran, Duygu. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2007., 2007.)
    The experimental studies have shown that the PROX activity of the Pt{Sn/AC catalyst is either unaffected or positively affected from the presence of carbon dioxide in the feed mixture. The catalyst characterization studies ...
  • Numerical investigation of hydrogen production from methane for small scale stationary PEM fuel cell applications 
    Tan, Özgür. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2007., 2007.)
    The steady-state behaviour of the fuel processor system consisting of a catalytic indirect partial oxidation reactor (combined total oxidation/steam reforming), a water-gas shift converter and a preferential carbon monoxide ...
  • Studies on the controlling network of S. Cerevisiae via expression profiling 
    Cankorur, Ayça. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2007., 2007.)
    This study aimed to identify whether the signature of phosphorylation or dephoshorylation of the proteins involved in glucose sensing, signal transduction and glucose repression pathways can be observed at the transcription ...
  • Supercritical carbon dioxide immobilization of glucose oxidase on conducting polymers towards biosensor production 
    Talay, Defne Kayrak. (Thesis (Ph.D.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2007., 2007.)
    In this work, glucose oxidase (GOX) is immobilized on conducting polymer matrices (polypyrrole film, PPY; polyurethane/polpyrrole composite foam and film, PU/PPY) via Supercritical Fluid Immobilization (SFI) for further ...
  • Sphingolipidomics: qualification and quantification of sphingolipids in yeast 
    Yücel, Esra Börklü. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2007., 2007.)
    BY4743 parent strain and three homozygous deletion mutants, ino1D/ino1D, slc1D/slc1D and ser2D/ser2D, along with four heterozygous deletion mutants INO1/ino1D, SLC1/slc1D, LCB1/lcb1D, and LCB2/lcb2D of S. cerevisiae are ...
  • Game theoric analysis of MAPK signaling pathways in Saccharomyces cerevisiae 
    Çavlı, Can. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2007., 2007.)
    Understanding cellular signaling is central for gaining insight into the molecular mechanisms behind diseases as well as adaptation of living cells to changes in the environment. Signaling pathways are often branched in ...
  • Structural analysis of epidermal growth factor receptor and yeast signaling networks 
    Tekir, Saliha Durmuş. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2007., 2007.)
    The recent progress in high-throughput technologies is allowing the reconstruction of large-scale models of signaling networks and development of corresponding analysis methods. Network properties of the most comprehensive ...
  • A computational approach for analysis of communication in proteins 
    Özel, Sinem. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2007., 2007.)
    Allostery and communication in proteins are crucial for the regulation of protein functions. The binding of a ligand changes the affinity of the protein at a distal ligand binding site and leads to conformational changes ...
  • Kinetic modeling of CO oxidation by genetic programming 
    Yarangüme, Verda. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2008., 2008.)
    In this thesis, the kinetic modeling of CO oxidation was performed using genetic programming. A reaction rate equation was created from the experimental data, and then this equation was used to predict the mechanism of the ...
  • Adaptive Clarke-Gawthrop self-tuning control of blood glucose concentration in patients with Type I diabetes 
    Çölmekçi, Ceylan. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2008., 2008.)
    Adaptive Clarke-Gawthrop type of self-tuning controller is used for regulating the blood glucose concentration in Type I diabetic patients. This control algorithm is proposed to be integrated into the automation pumps used ...
  • The dynamics underlying enhancement of E2 ligase activity by E3 ligases in sumoylation 
    Tozluoğlu, Melda. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2008., 2008.)
    Covalent attachment of SUMO (Small Ubiquitin Like Modifier) to proteins, sumoylation, is a posttranslational modification that can alter intracellular localization, interactions with other proteins or lead to modifications ...
  • Molecular dynamics of substrate recognition and co-evolution in HIV-1 protease 
    Özen, Ayşegül. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2008., 2008.)
    Human Immunodeficiency Virus Type 1 (HIV-1) protease recognizes at least ten cleavage sites as its natural substrates. There is little sequence homology between these substrates and they are asymmetric around the cleavage ...
  • Effect of temperature on collective dynamics of proteins: a time series analysis 
    Türe, Özlem. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2008., 2008.)
    Molecular Dynamics (MD) simulations are used to analyze the internal motions of proteins. In this thesis, the molecular dynamics trajectories of the apo form of dihydrofolate reductase (DHFR), and both apo and holo forms ...

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