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Browsing Bilgisayar Mühendisliği by Author "Turgut, Pemra Doruker."

Browsing Bilgisayar Mühendisliği by Author "Turgut, Pemra Doruker."

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  • Application of mixed coarse-grained elastic network model to protein-ligand interactions 
    Tezcan, Nurver. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2014., 2014.)
    Ligand binding to an active or allosteric regulatory site of enzyme may lead conformational changes or changes in protein dynamics. The aim of this thesis is to explore the effect of ligand binding on vibrational dynamics ...
  • Blind docking simulations of benzothiazoles on triosephosphate isomerase 
    Ural, Gülgün. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2011., 2011.)
    Selective inhibition of the activity of the glycolytic enzyme triosephosphate isomerase from Trypanosoma cruzi (TcTIM) as opposed to human TIM (hTIM) has been critical for drug design studies on Chagas disease. The aim of ...
  • Effect of ligand binding on protein dynamics: a time series analysis 
    Başkan, Sena. (Thesis (M.S.)-Bogazici University. Institute for Graduate Studies in Science and Engineering, 2008., 2008.)
    Internal dynamics of proteins can be analyzed by the help of simulation techniques, one of which is molecular dynamics (MD) simulation. Principal component analysis is commonly applied on large-sized MD simulation data to ...
  • Exploring the intrinsic dynamics of human beta-2 adrenergic G-protein coupled receptor 
    Özcan, Özer. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2011., 2011.)
    G protein-coupled receptors (GPCRs) represent the single largest family of cell surface receptors involved in signal transduction. It is estimated that several hundred distinct members of this receptor family in humans ...
  • Investigation of allosteric coupling in beta-2 adrenergic receptor through molecular dynamics simulations 
    Özgür, Canan. (Thesis (M.S.) - Bogazici University. Institute for Graduate Studies in Science and Engineering, 2014., 2014.)
    The purpose of this thesis is to investigate the allosteric coupling between intra- and extracellular parts of G-protein coupled human β2 adrenergic receptor (β2AR) in the presence of intracellular loop ICL3, which is ...

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